Commit Graph

  • 2a80794 Workaround issue #6, fix unit test timesteps by Ruben Verweij 2018-08-23 15:26:57 +0200
  • 93f886e Fix to take into account real acquisition times when calculating framerate instead of the set interval (which is sometimes inaccurate) by Ruben Verweij 2018-08-22 13:58:51 +0200
  • dd87a37 3.0.9 by Ruben Verweij 2018-04-05 15:51:00 +0200
  • f2e6153 Fix test and update gitignore by Ruben Verweij 2018-01-11 15:43:43 +0100
  • 2ba8451 Fix version number by Ruben Verweij 2018-01-11 15:35:35 +0100
  • 5673262 New release by Ruben Verweij 2018-01-04 16:30:57 +0100
  • 800fe54 Version 3.0.7 by Ruben Verweij 2018-01-04 15:12:12 +0100
  • 731a052 Fix #4 by Ruben Verweij 2018-01-04 14:08:13 +0100
  • b4e5e34 Update contributing by Ruben Verweij 2017-11-01 15:28:48 +0100
  • 8182af7 Add universal bdist wheel by Ruben Verweij 2017-10-30 15:37:23 +0100
  • 86bd2eb Version 3.0.6: Add FOV support by Ruben Verweij 2017-10-30 15:26:25 +0100
  • e884071 Add additional date formats for parsing raw metadata by Ruben Verweij 2017-09-19 11:26:15 +0200
  • 0af2d2e Version 3.0.5 by Ruben Verweij 2017-08-11 14:01:36 +0200
  • 04e67fc Refactor CQ by Ruben Verweij 2017-07-19 17:09:16 +0200
  • 1587ed8 Test color channels, fix a bug in color channel encoding by Ruben Verweij 2017-07-19 15:02:14 +0200
  • 81b785d Test legacy Nd2, parser, reader fixes by Ruben Verweij 2017-07-19 12:06:14 +0200
  • c230209 Extend unit tests by Ruben Verweij 2017-07-19 11:29:55 +0200
  • a0ae292 Extend unit tests, remove badge by Ruben Verweij 2017-07-19 10:54:54 +0200
  • b85a862 Remove unused lines from artificial by Ruben Verweij 2017-07-18 17:16:46 +0200
  • 5214180 Fix bytes compatibility for Python 2 by Ruben Verweij 2017-07-18 17:06:21 +0200
  • d943ee8 Unit testing: test the correct parsing of image_attributes by Ruben Verweij 2017-07-18 17:00:15 +0200
  • 85e15ac Add a class priority so this reader will be loaded before the Bioformats reader by Ruben Verweij 2017-07-10 17:10:39 +0200
  • 1e90e3a Add try/except blocks to make code more robust + fix unit tests by Ruben Verweij 2017-07-07 12:30:23 +0200
  • a80fb35 Merge remote-tracking branch 'origin/master' by Ruben Verweij 2017-07-07 12:22:22 +0200
  • 4acdf0c Extend artificial to also write the label_map + data to file for more extensive unit testing by Ruben Verweij 2017-07-07 12:22:03 +0200
  • 2471b53 New documentation theme by Ruben Verweij 2017-07-06 21:59:03 +0200
  • 8c84fa6 Fix imports of pims and release 3.0.4 by Ruben Verweij 2017-07-04 10:45:45 +0200
  • d743d55 Fix small bug when uiCount cannot be found by Ruben Verweij 2017-06-22 09:58:02 +0200
  • 6a63a6f Version 3.0.3 by Ruben Verweij 2017-06-21 15:41:38 +0200
  • 39eada0 Add a third method to determine the loop sampling interval by Ruben Verweij 2017-06-20 16:22:19 +0200
  • 0aa3a35 Travis: use less python versions for testing by Ruben Verweij 2017-06-20 09:47:40 +0200
  • 925f0eb Update travis script because of upstream bug by Ruben Verweij 2017-06-20 09:43:03 +0200
  • 94e10db Cache timesteps and add frame rate property by Ruben Verweij 2017-06-20 09:36:52 +0200
  • bce39c1 Always set 't' axis by Ruben Verweij 2017-06-19 09:21:55 +0200
  • a228fdb Also get sampling interval when dAvgPeriodDiff is not set by Ruben Verweij 2017-06-16 15:11:23 +0200
  • 7466b10 New documentation by Ruben Verweij 2017-06-16 14:26:30 +0200
  • 5f77688 Only setup certain axes if size > 1 by Ruben Verweij 2017-06-15 15:04:07 +0200
  • f4ee6b9 Update version 3.0.2 by Ruben Verweij 2017-05-08 14:02:54 +0200
  • 3b65069 Issue #2: fix calculation of image group number when there is no z-axis by Ruben Verweij 2017-04-19 15:05:11 +0200
  • 683d3d1 Merge remote-tracking branch 'origin/master' by Ruben Verweij 2017-04-19 12:09:50 +0200
  • 1628890 Issue #2: clean up axes handling, guess a better default axis by Ruben Verweij 2017-04-19 12:09:27 +0200
  • 6c8545b Update README.md by Ruben Verweij 2017-04-18 17:05:03 +0200
  • 0deef7b Merge remote-tracking branch 'origin/master' by Ruben Verweij 2017-04-18 16:50:55 +0200
  • b7c60e3 Fix issue #2 by following PIMS conventions more closely by Ruben Verweij 2017-04-18 16:48:39 +0200
  • 880b87f Installation via Conda Forge by Ruben Verweij 2017-04-18 09:17:15 +0200
  • a66c1cf Add conda installation instructions by Ruben Verweij 2017-04-18 09:16:21 +0200
  • 10c2589 Do not add 'z' to sizes of the reader if there is only one plane, as seems to be the PIMS convention by Ruben Verweij 2017-04-10 12:35:57 +0200
  • 9344601 version 3.0.1: Include LICENSE via MANIFEST.in for conda forge by Ruben Verweij 2017-04-06 15:50:54 +0200
  • f88965c Fix the number of frames by Ruben Verweij 2017-04-06 15:35:16 +0200
  • 68ffe5d update docs for new version by Ruben Verweij 2017-04-04 09:29:04 +0200
  • 2585f54 Update readme for release on PyPi by Ruben Verweij 2017-04-04 09:24:30 +0200
  • 86930b5 Update documentation, quick start tutorial by Ruben Verweij 2017-04-02 17:43:48 +0200
  • d2a5d96 Add test for raw metadata storage by Ruben Verweij 2017-03-30 15:43:23 +0200
  • 17df7ed Add more unit test for common + fix possibly endless loop by Ruben Verweij 2017-03-30 15:28:49 +0200
  • e5557b0 Fix creating test file for unit tests by Ruben Verweij 2017-03-30 14:55:41 +0200
  • 9d2188a Bug fixes by testing different .nd2 files by Ruben Verweij 2017-03-30 14:36:00 +0200
  • 0ba84df Bump version number to reflect api changes by Ruben Verweij 2017-03-29 09:57:52 +0200
  • c262ef3 Update README.md by Ruben Verweij 2017-03-17 10:41:35 +0100
  • 8332037 Add badge by Ruben Verweij 2017-03-17 10:40:18 +0100
  • 741f928 Add badge by Ruben Verweij 2017-03-17 10:32:25 +0100
  • 604f7dc Add badge by Ruben Verweij 2017-03-17 10:21:21 +0100
  • d4ae515 Extend unit tests by Ruben Verweij 2017-03-17 09:57:37 +0100
  • a50b446 Extend unit tests by Ruben Verweij 2017-03-17 09:52:28 +0100
  • 2b0600e Extend unit tests by Ruben Verweij 2017-03-16 17:31:38 +0100
  • c6cabd2 Fix link by Ruben Verweij 2017-03-16 10:40:13 +0100
  • 2c121dc New documentation by Ruben Verweij 2017-03-16 10:38:37 +0100
  • aa7e05f Very basic Reader test by Ruben Verweij 2017-03-15 16:59:33 +0100
  • 0a17948 Last test of LabelMap by Ruben Verweij 2017-03-15 16:48:01 +0100
  • 4183bcc Code fixes by Ruben Verweij 2017-03-15 16:39:13 +0100
  • 7a8733b Test the LabelMap by Ruben Verweij 2017-03-15 16:26:37 +0100
  • 9696954 Add test for Parser by Ruben Verweij 2017-03-15 14:20:53 +0100
  • 03bfc09 Add ArtificialND2 class to help in testing nd2 file reading and parsing by Ruben Verweij 2017-03-15 14:02:53 +0100
  • 5974408 Remove functional test for now, cannot store large nd2 files on github by Ruben Verweij 2017-03-15 13:36:47 +0100
  • dc987db Remove test data (until I find a solution to store them on github) by Ruben Verweij 2017-03-15 13:26:27 +0100
  • 59101e6 data by Ruben Verweij 2017-03-15 12:50:36 +0100
  • c212ced Test files to git large file storage (git LFS) by Ruben Verweij 2017-03-15 12:37:14 +0100
  • 3620064 Update tests by Ruben Verweij 2017-03-15 12:16:39 +0100
  • c6e5a13 Provide backwards compatibility with old 2.1.3 version by Ruben Verweij 2017-03-15 10:49:45 +0100
  • 2eb6c8e update docs by Ruben Verweij 2017-03-15 10:22:11 +0100
  • d5e2726 Update tutorial by Ruben Verweij 2017-03-15 10:20:37 +0100
  • 8e2b082 Update README.md by Ruben Verweij 2017-03-15 09:50:02 +0100
  • b7ff34d Cleanup documentation by Ruben Verweij 2017-03-14 16:04:23 +0100
  • 719c44e Merge remote-tracking branch 'origin/master' by Ruben Verweij 2017-03-14 14:27:00 +0100
  • 480432d Improve documentation by Ruben Verweij 2017-03-14 14:23:22 +0100
  • 9d4d8e8 Update README.md by Ruben Verweij 2017-03-10 11:31:13 +0100
  • 0d3a5c0 Update README.md by Ruben Verweij 2017-03-10 11:30:06 +0100
  • 2f2f138 docstrings by Ruben Verweij 2017-03-08 14:19:53 +0100
  • 0d1f14c Merge branch 'master' of https://github.com/rbnvrw/nd2reader by Ruben Verweij 2017-03-08 10:28:43 +0100
  • 60378ad Cleanup docstrings to use google python docs by Ruben Verweij 2017-03-08 10:28:30 +0100
  • 92a3ab6 Update README.md by Ruben Verweij 2017-03-08 10:04:02 +0100
  • 9d7c431 generated docs in other branch by Ruben Verweij 2017-03-08 10:02:17 +0100
  • e7e7a21 API docs using Sphinx by Ruben Verweij 2017-03-06 21:41:36 +0100
  • 31dd191 Update README.md by Ruben Verweij 2017-03-06 21:08:10 +0100
  • fec7afa Set theme jekyll-theme-cayman by Ruben Verweij 2017-03-06 21:04:51 +0100
  • 09b6b80 Create index.md by Ruben Verweij 2017-03-06 21:03:54 +0100
  • 4841c09 Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader by Ruben Verweij 2017-03-06 13:38:49 +0100
  • 0ba1365 Add ability to bundle the color axis by Ruben Verweij 2017-03-03 14:36:33 +0100
  • a398edf Add ability to bundle the color axis by Ruben Verweij 2017-03-03 13:56:24 +0100
  • a70e3b6 Speedup numpy installation on travis by Ruben Verweij 2017-03-02 14:34:35 +0100
  • 2ad3db2 Fix old leftover in setup by Ruben Verweij 2017-03-02 14:02:53 +0100