Zolfa
f220515eb6
complete fork: nd2reader -> nd2reader2
3 years ago
Zolfa
bfbd78bbe2
added x coordiantes and rotation matrix readout
3 years ago
Zolfa
cd06fd90ff
Minor changes for dev branched version release
3 years ago
Zolfa
831a16983a
Add functions to read only rectangular regions.
4 years ago
Ruben Verweij
c33569f334
Merge pull request #43 from ggirelli/ggirelli-filename-patch
Fixed missing filename path.
4 years ago
Gabriele Girelli
11badb3ee5
Fixed missing filename path.
4 years ago
Ruben Verweij
2524b42a0d
Merge pull request #40 from ggirelli/ggirelli-patch-parser-for-stitched-images
Removed empty bytes at channel subchunk ends for issue #31
4 years ago
Gabriele Girelli
65731c9beb
Update stitched.py
4 years ago
Ruben Verweij
993c09e843
Merge pull request #39 from ggirelli/ggirelli-patch-nd2reader-from-file
Update to reader.py for issue #35
4 years ago
Gabriele Girelli
71ddf599bb
Fixed func def
4 years ago
Gabriele Girelli
a27ce7745c
Refactored.
4 years ago
Gabriele Girelli
7fd91d6a32
Added get_image test of stitched sample
4 years ago
Gabriele Girelli
99e5d507fb
Using numpy assets when possible, and formatted with black
4 years ago
Gabriele Girelli
fbf2fc7271
Switched from warning to raising exception and improved message
4 years ago
Gabriele Girelli
1e0c029283
Improved assert and warning messages
4 years ago
Gabriele Girelli
a5faf7663a
Fixed new init method
4 years ago
Gabriele Girelli
08eca8966c
Implemented test.
4 years ago
Gabriele Girelli
4f11f3f4d0
Allowed for fh to be either str or IO, and formatted with black.
4 years ago
Gabriele Girelli
2e83d26544
Changed structure to check/remove method pair
4 years ago
Gabriele Girelli
237bea49eb
Allowing case of multiple unwanted bytes per step
4 years ago
Gabriele Girelli
5bf56afaec
Complexity
4 years ago
Gabriele Girelli
16b23c2458
Update parser.py
4 years ago
Gabriele Girelli
42a6bd45e4
Complexity
4 years ago
Gabriele Girelli
031856ac8f
Fixed complexity
4 years ago
Gabriele Girelli
20d7faa6dc
Regenerated Reader
4 years ago
Gabriele Girelli
9d40a12f96
Fixed complexity
4 years ago
Gabriele Girelli
1ed1f0bb24
Removed empty bytes at channel subchunk ends
Checks if the chunk data size does not match the expected, based on image axes size. Verifies that all unwanted bytes are zero-bytes and removes them. Two triggered warnings: one for unwanted bytes and one for bytes removed (more of an INFO though).
4 years ago
Gabriele Girelli
59a99a8f0e
Update reader.py
4 years ago
Ruben Verweij
b50a006d29
update Travis settings
5 years ago
Ruben Verweij
10e080da78
Fix issue #34
5 years ago
Ruben Verweij
e309631c84
Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate
5 years ago
Ruben Verweij
1b8b835332
Fix error in loop handling
5 years ago
Ruben Verweij
235070c658
Merge pull request #32 from ulugbekna/handle-invalid-file-extension
add a check that filename passed to ND2Reader has extension .nd2
5 years ago
Ulugbek Abdullaev
8ccbb975c8
Merge pull request #1 from ggirelli/patch-1
f-strings not supported by Python3.6-
5 years ago
Gabriele Girelli
90a4ffc747
f-strings not supported by Python3.6-
5 years ago
Ruben Verweij
94e028909c
Fix typo in z-level check
5 years ago
Ulugbek Abdullaev
9059a15781
add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading
add an exception InvalidFileType
add a test for the new behavior of ND2Reader constructor
5 years ago
Ruben Verweij
e165788c14
Merge pull request #33 from ggirelli/master
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
8c6d77a11f
Fix codeclimate integration
5 years ago
Ruben Verweij
94b83cd5f0
Update README.md
5 years ago
Ruben Verweij
1cf084f7f2
Remove support for Python < 3.5
5 years ago
Gabriele Girelli
fe2bb5932c
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
06c9c20ce1
Version 3.2.3 due to build error of new version number storage system
5 years ago
Ruben Verweij
0a48885fec
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
4a5965a457
New version 3.2.2
5 years ago
Ruben Verweij
6d64a66c4b
Update release.txt
5 years ago
Ruben Verweij
aa6a4fbc93
Merge pull request #30 from rbnvrw/add-code-of-conduct-1
Create CODE_OF_CONDUCT.md
5 years ago
Ruben Verweij
099d2d5dc1
Create CODE_OF_CONDUCT.md
5 years ago
Ruben Verweij
c59aeea418
Merge pull request #28 from ggirelli/master
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
5 years ago
Gabriele Girelli
399b42e383
Update raw_metadata.py
5 years ago