Gabriele Girelli
99e5d507fb
Using numpy assets when possible, and formatted with black
4 years ago
Gabriele Girelli
fbf2fc7271
Switched from warning to raising exception and improved message
4 years ago
Gabriele Girelli
1e0c029283
Improved assert and warning messages
4 years ago
Gabriele Girelli
2e83d26544
Changed structure to check/remove method pair
4 years ago
Gabriele Girelli
237bea49eb
Allowing case of multiple unwanted bytes per step
4 years ago
Gabriele Girelli
5bf56afaec
Complexity
4 years ago
Gabriele Girelli
16b23c2458
Update parser.py
4 years ago
Gabriele Girelli
42a6bd45e4
Complexity
4 years ago
Gabriele Girelli
031856ac8f
Fixed complexity
4 years ago
Gabriele Girelli
20d7faa6dc
Regenerated Reader
4 years ago
Gabriele Girelli
9d40a12f96
Fixed complexity
4 years ago
Gabriele Girelli
1ed1f0bb24
Removed empty bytes at channel subchunk ends
Checks if the chunk data size does not match the expected, based on image axes size. Verifies that all unwanted bytes are zero-bytes and removes them. Two triggered warnings: one for unwanted bytes and one for bytes removed (more of an INFO though).
4 years ago
Ruben Verweij
10e080da78
Fix issue #34
5 years ago
Ruben Verweij
e309631c84
Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate
5 years ago
Ruben Verweij
1b8b835332
Fix error in loop handling
5 years ago
Gabriele Girelli
90a4ffc747
f-strings not supported by Python3.6-
5 years ago
Ruben Verweij
94e028909c
Fix typo in z-level check
5 years ago
Ulugbek Abdullaev
9059a15781
add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading
add an exception InvalidFileType
add a test for the new behavior of ND2Reader constructor
5 years ago
Gabriele Girelli
fe2bb5932c
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
06c9c20ce1
Version 3.2.3 due to build error of new version number storage system
5 years ago
Ruben Verweij
4a5965a457
New version 3.2.2
5 years ago
Gabriele Girelli
399b42e383
Update raw_metadata.py
5 years ago
Gabriele Girelli
898dd09e14
Update raw_metadata.py
Changed isinstance to is.
Fixed condition triggering warning.
5 years ago
Gabriele Girelli
bec47a5fb6
Update raw_metadata.py
5 years ago
Gabriele Girelli
df1cf09e36
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
5 years ago
Ruben Verweij
4d9bc03c44
Resolve issue #24
5 years ago
Ruben Verweij
31f80554b1
Issue #24 : only return a Frame when bundle_axes is only y,x
5 years ago
Ruben Verweij
322969bceb
Update get_frame_vczyx function based on feedback in issue #24
5 years ago
Ruben Verweij
8e0a642ed2
Fixes issue #25 , adds unit tests and release 3.2.1
5 years ago
Ruben Verweij
38a0def075
Fixes issue 25
5 years ago
Ruben Verweij
54cce884c1
Fix issue with bundle_axes and get_frame
5 years ago
Ruben Verweij
52fc791eb7
Update version 3.2.0
5 years ago
unknown
17881d60f1
More informative warning if gap frames encountered and filled with np.nan
5 years ago
unknown
43dbc61412
Handle gap frames with np.nan-filled array and issue warning about it.
5 years ago
unknown
da185df9cd
removed NoImageError call, class def, and import references since now redundant
5 years ago
Ruben Verweij
295ccf5e5b
Add acquisition times to parser
5 years ago
Ruben Verweij
38d6e8ce5a
Fixes issue #11
5 years ago
Ruben Verweij
6dd7f9dfe2
Fixes issue #16
5 years ago
Ruben Verweij
3e4845b309
Fallback function for old get_frame_2D function
5 years ago
unknown
1fed0c1fb1
fix to allow reading of ND2-files with missing frames, due to e.g. skipping z-positions in one channel of a multichannel image; based on most recent commit of master
5 years ago
Ruben Verweij
faa495ecdb
Use _register_get_frame functions
6 years ago
Gregor Lichtner
016239f1dd
added event names
6 years ago
Gregor Lichtner
26bdbf36f0
fixed behavior when no events are available
6 years ago
Gregor Lichtner
4efd9a2ea4
added image events to parser
6 years ago
Gregor Lichtner
7c64194ca8
include only valid loops in experiment metadata
6 years ago
jbf81tb
75f19554e4
get_frame_2D fix
6 years ago
Ruben Verweij
f9665259df
Fix fps calculation
6 years ago
Ruben Verweij
bc2f5a96f6
Version 3.1.0
6 years ago
Ruben Verweij
509979a2bc
Fix error
6 years ago
Ruben Verweij
451b555539
Fix formatting error
6 years ago