Ruben Verweij
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2b0600ee09
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Extend unit tests
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8 years ago |
Ruben Verweij
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2c121dc0ff
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New documentation
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8 years ago |
Ruben Verweij
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c6e5a13a0d
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Provide backwards compatibility with old 2.1.3 version
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8 years ago |
Ruben Verweij
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cb2c06f9a5
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Complete refactor
- use only one parser for v3 files
- merge some classes
- return metadata as raw metadata and dictionary
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8 years ago |
Ruben Verweij
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d19a9c305b
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Refactor, add metadata to Frame objects, support PIMS open function
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8 years ago |
Ruben Verweij
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7b7bf1ac25
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Start porting to PIMS framework, cleanup unnecessary files
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8 years ago |
Ruben Verweij
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6f800c49f6
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Added parsing for basic ROI metadata.
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8 years ago |
jim
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4194f073dd
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resolves #150, #149: removed camera settings entirely because they are buggy and terrible
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9 years ago |
Jim Rybarski
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e992f743c7
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resolves #132: The `select` method now allows you to specify a range of images to iterate over
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9 years ago |
jim
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7064e6f0ae
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#143 discovered that humans can ruin everything
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9 years ago |
jim
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c3d7273dfa
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resolves #143: we can now programatically access the width of pixels in microns
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9 years ago |
Jim Rybarski
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0289234391
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Potential fix for #138. Makes select() work with ND2s that have a single frame by iterating over a range of integers instead of the frames.
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9 years ago |
Jim Rybarski
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25c4ce7f78
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resolves #135. we're ready to publish version 2.0.0
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9 years ago |
Jim Rybarski
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343a39dd9d
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fixes #133. The index assigned to images produced by `select` was wrong.
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9 years ago |
Jim Rybarski
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47966b75dd
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resolves #129: renamed filter() to select()
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9 years ago |
Jim Rybarski
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7f359bacc1
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updated docs, fixed typos
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9 years ago |
Jim Rybarski
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f366f38009
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resolves #114. added index to Images to help with testing. Increased test coverage for filter()
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9 years ago |
Jim Rybarski
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e141b0504c
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#114: wrote fast filter that works, but we need way more testing for corner cases
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9 years ago |
Jim Rybarski
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1268b2768c
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#125: fixed bug by ordering channel names, which works but seems suspect. added py2 support to Dockerfile
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9 years ago |
Jim Rybarski
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1436068d4c
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#125: refactored to make adding more metadata easier
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9 years ago |
jim
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09173fcb9e
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resolves #110: added comments and parameter types to every method with a few minor exceptions where it's super obvious and unimportant what's happening
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9 years ago |
jim
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cc2a49ac6d
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#110 added many comments, fixed parameter names where frame_number was incorrectly used in place of index
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9 years ago |
jim
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7c0c8be065
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resolves #119: removed some commented-out code and an unused import
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9 years ago |
jim
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fd3c67d65b
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resolves #112: removed ImageGroup object and image_sets method, as they were deprecated because of their general uselessness
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9 years ago |
Jim Rybarski
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90ae0907de
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resolves #106: implemented missing method and added tests
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9 years ago |
jim
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2e6611b027
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#101: Shows the text "Created:" even if there is no creation date
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9 years ago |
jim
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c3a3cbadd4
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resolves #101: No longer assumes a date will always be present in the metadata and falls back by displayed "Unknown" in the Nd2 repr
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9 years ago |
Jim Rybarski
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963310178d
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fixed merge conflict and docs
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9 years ago |
Jim Rybarski
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d49c5f03eb
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#96: documentation changes
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9 years ago |
Jim Rybarski
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a9ccdb19ce
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resolves #96: added context manager
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9 years ago |
Jim Rybarski
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2b2ad95a82
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fixed syntax errors
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9 years ago |
Jim Rybarski
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ac91d388c1
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cleaned up a bit
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9 years ago |
jim
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e55029c1de
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resolves #90
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9 years ago |
jim
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544fd974eb
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#66 more refactoring
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9 years ago |
jim
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177530d657
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#66 refactored init
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9 years ago |
jim
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c096653a92
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#66 interface refactoring is complete except for comments
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9 years ago |
jim
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949d0612d4
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#66 began enormous refactor to support multiple versions of ND2s in an elegant way
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9 years ago |
jim
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55a3222e4f
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resolves #81: images now include the frame number (formerly called the time index). This tells you what order a particular image appeared in its field of view, which is useful when you're considering fields of view as independent regions of interest. Also fixed a bug where the number of image cycles (which should be renamed to "frames") was incorrect for some nd2s.
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9 years ago |
jim
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86d2924d35
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resolves #68: indexing was not returning the correct image and skipped frame entirely when there were multiple channels
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9 years ago |
Jim Rybarski
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49737f678f
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resolves #56
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10 years ago |
jim
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18bb3f5392
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resolves #54: raises Index error when you go out of bounds
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10 years ago |
jim
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07e2297aaf
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#42 fixed dockerfile and makefile, got one passing test
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10 years ago |
jim
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ae09b688b2
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#42 refactored and tidied up a bit, created test files
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10 years ago |
Jim Rybarski
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a40b243abb
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resolves #40: adds slicing semantics
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10 years ago |
Jim Rybarski
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454f5529fe
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#39 fixed image sets
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10 years ago |
Jim Rybarski
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89ddce3a7b
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resolves #39
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10 years ago |
Jim Rybarski
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0f9c6128e3
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#39: field of view works
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10 years ago |
Jim Rybarski
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e8cb08f4cc
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#39: calculating channel and z_level works right
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10 years ago |
Jim Rybarski
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c9d3a82930
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#39: getting individual images works, however, z_level and field of view are wrong
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10 years ago |
Jim Rybarski
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4c1a4a0330
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resolves #45: implements the __len__ method
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10 years ago |