Gabriele Girelli
1e0c029283
Improved assert and warning messages
4 years ago
Gabriele Girelli
2e83d26544
Changed structure to check/remove method pair
4 years ago
Gabriele Girelli
237bea49eb
Allowing case of multiple unwanted bytes per step
4 years ago
Gabriele Girelli
5bf56afaec
Complexity
4 years ago
Gabriele Girelli
16b23c2458
Update parser.py
4 years ago
Gabriele Girelli
42a6bd45e4
Complexity
4 years ago
Gabriele Girelli
031856ac8f
Fixed complexity
4 years ago
Gabriele Girelli
20d7faa6dc
Regenerated Reader
4 years ago
Gabriele Girelli
9d40a12f96
Fixed complexity
4 years ago
Gabriele Girelli
1ed1f0bb24
Removed empty bytes at channel subchunk ends
Checks if the chunk data size does not match the expected, based on image axes size. Verifies that all unwanted bytes are zero-bytes and removes them. Two triggered warnings: one for unwanted bytes and one for bytes removed (more of an INFO though).
4 years ago
Ruben Verweij
b50a006d29
update Travis settings
5 years ago
Ruben Verweij
10e080da78
Fix issue #34
5 years ago
Ruben Verweij
e309631c84
Use timesteps as fallback to NDExperiment loops to determine total file duration, and thus framerate
5 years ago
Ruben Verweij
1b8b835332
Fix error in loop handling
5 years ago
Ruben Verweij
235070c658
Merge pull request #32 from ulugbekna/handle-invalid-file-extension
add a check that filename passed to ND2Reader has extension .nd2
5 years ago
Ulugbek Abdullaev
8ccbb975c8
Merge pull request #1 from ggirelli/patch-1
f-strings not supported by Python3.6-
5 years ago
Gabriele Girelli
90a4ffc747
f-strings not supported by Python3.6-
5 years ago
Ruben Verweij
94e028909c
Fix typo in z-level check
5 years ago
Ulugbek Abdullaev
9059a15781
add a check that filename passed to nd2reader has an extension .nd2 because the current implementation raises InvalidVersionError if the passed file is non-nd2 type, which is misleading
add an exception InvalidFileType
add a test for the new behavior of ND2Reader constructor
5 years ago
Ruben Verweij
e165788c14
Merge pull request #33 from ggirelli/master
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
8c6d77a11f
Fix codeclimate integration
5 years ago
Ruben Verweij
94b83cd5f0
Update README.md
5 years ago
Ruben Verweij
1cf084f7f2
Remove support for Python < 3.5
5 years ago
Gabriele Girelli
fe2bb5932c
Removed self.__class__ from super() call
5 years ago
Ruben Verweij
06c9c20ce1
Version 3.2.3 due to build error of new version number storage system
5 years ago
Ruben Verweij
0a48885fec
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
4a5965a457
New version 3.2.2
5 years ago
Ruben Verweij
6d64a66c4b
Update release.txt
5 years ago
Ruben Verweij
aa6a4fbc93
Merge pull request #30 from rbnvrw/add-code-of-conduct-1
Create CODE_OF_CONDUCT.md
5 years ago
Ruben Verweij
099d2d5dc1
Create CODE_OF_CONDUCT.md
5 years ago
Ruben Verweij
c59aeea418
Merge pull request #28 from ggirelli/master
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
5 years ago
Gabriele Girelli
399b42e383
Update raw_metadata.py
5 years ago
Gabriele Girelli
898dd09e14
Update raw_metadata.py
Changed isinstance to is.
Fixed condition triggering warning.
5 years ago
Gabriele Girelli
bec47a5fb6
Update raw_metadata.py
5 years ago
Gabriele Girelli
df1cf09e36
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
5 years ago
Ruben Verweij
4d9bc03c44
Resolve issue #24
5 years ago
Ruben Verweij
31f80554b1
Issue #24 : only return a Frame when bundle_axes is only y,x
5 years ago
Ruben Verweij
dc9ae0bb98
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
322969bceb
Update get_frame_vczyx function based on feedback in issue #24
5 years ago
Ruben Verweij
8b56bed6e0
Update release.txt
5 years ago
Ruben Verweij
0d533bfb96
Make unit test less specific to accomodate for different versions of struct
5 years ago
Ruben Verweij
8e0a642ed2
Fixes issue #25 , adds unit tests and release 3.2.1
5 years ago
Ruben Verweij
38a0def075
Fixes issue 25
5 years ago
Ruben Verweij
5f04a516fb
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
54cce884c1
Fix issue with bundle_axes and get_frame
5 years ago
Ruben Verweij
ac93bb5ad4
Update release.txt
5 years ago
Ruben Verweij
52fc791eb7
Update version 3.2.0
5 years ago
Ruben Verweij
74463f535c
Merge branch 'master' of github.com:rbnvrw/nd2reader
5 years ago
Ruben Verweij
09ed7a50d1
Version 3.2.0
5 years ago
Ruben Verweij
c2f2e0c3e9
Merge pull request #22 from WMAPernice/fix-missing-frames-issue_to-current-master
Fix to allow reading of ND2-files with missing frames.
5 years ago