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@ -4,6 +4,7 @@ from nd2reader.artificial import ArtificialND2 |
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from nd2reader.common import check_or_make_dir |
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from nd2reader.common import check_or_make_dir |
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from nd2reader.exceptions import InvalidVersionError |
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from nd2reader.exceptions import InvalidVersionError |
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from nd2reader.parser import Parser |
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from nd2reader.parser import Parser |
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import urllib.request |
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class TestParser(unittest.TestCase): |
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class TestParser(unittest.TestCase): |
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@ -13,15 +14,24 @@ class TestParser(unittest.TestCase): |
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def setUp(self): |
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def setUp(self): |
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dir_path = path.dirname(path.realpath(__file__)) |
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dir_path = path.dirname(path.realpath(__file__)) |
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check_or_make_dir(path.join(dir_path, 'test_data/')) |
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self.test_file = path.join(dir_path, 'test_data/test.nd2') |
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check_or_make_dir(path.join(dir_path, "test_data/")) |
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self.test_file = path.join(dir_path, "test_data/test.nd2") |
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self.create_test_nd2() |
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self.create_test_nd2() |
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def test_can_open_test_file(self): |
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def test_can_open_test_file(self): |
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self.create_test_nd2() |
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self.create_test_nd2() |
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with open(self.test_file, 'rb') as fh: |
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with open(self.test_file, "rb") as fh: |
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parser = Parser(fh) |
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parser = Parser(fh) |
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self.assertTrue(parser.supported) |
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self.assertTrue(parser.supported) |
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def test_get_image(self): |
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stitched_path = "test_data/test_stitched.nd2" |
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if not path.isfile(stitched_path): |
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file_name, header = urllib.request.urlretrieve( |
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"https://downloads.openmicroscopy.org/images/ND2/karl/sample_image.nd2", |
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stitched_path, |
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) |
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with open(stitched_path, "rb") as fh: |
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parser = Parser(fh) |
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parser.get_image(0) |