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Fix error

zolfa-add_slices_loading
Ruben Verweij 6 years ago
parent
commit
509979a2bc
1 changed files with 2 additions and 2 deletions
  1. +2
    -2
      nd2reader/parser.py

+ 2
- 2
nd2reader/parser.py View File

@ -265,11 +265,11 @@ class Parser(object):
# The images for the various channels are interleaved within the same array. For example, the second image # The images for the various channels are interleaved within the same array. For example, the second image
# of a four image group will be composed of bytes 2, 6, 10, etc. If you understand why someone would design # of a four image group will be composed of bytes 2, 6, 10, etc. If you understand why someone would design
# a data structure that way, please send the author of this library a message. # a data structure that way, please send the author of this library a message.
number_of_true_channels = int(len(image_group_data[image_data_start:]) / (height * width))
number_of_true_channels = int(len(image_group_data[4:]) / (height * width))
try: try:
image_data = np.reshape(image_group_data[image_data_start::number_of_true_channels], (height, width)) image_data = np.reshape(image_group_data[image_data_start::number_of_true_channels], (height, width))
except ValueError: except ValueError:
image_data = np.reshape(image_group_data[image_data_start::number_of_true_channels], (height, int(len(image_group_data[image_data_start::number_of_true_channels])/height)))
image_data = np.reshape(image_group_data[image_data_start::number_of_true_channels], (height, int(round(len(image_group_data[image_data_start::number_of_true_channels])/height))))
# Skip images that are all zeros! This is important, since NIS Elements creates blank "gap" images if you # Skip images that are all zeros! This is important, since NIS Elements creates blank "gap" images if you
# don't have the same number of images each cycle. We discovered this because we only took GFP images every # don't have the same number of images each cycle. We discovered this because we only took GFP images every


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