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- class Metadata(object):
- """ A simple container for ND2 metadata. """
- def __init__(self, height, width, channels, date, fields_of_view, frames, z_levels, total_images_per_channel, pixel_microns):
- self._height = height
- self._width = width
- self._channels = channels
- self._date = date
- self._fields_of_view = fields_of_view
- self._frames = frames
- self._z_levels = z_levels
- self._total_images_per_channel = total_images_per_channel
- self._pixel_microns = pixel_microns
-
- @property
- def height(self):
- """
- The image height in pixels.
-
- :rtype: int
-
- """
- return self._height
-
- @property
- def width(self):
- """
- The image width in pixels.
-
- :rtype: int
-
- """
- return self._width
-
- @property
- def date(self):
- """
- The date and time when acquisition began.
-
- :rtype: datetime.datetime() or None
-
- """
- return self._date
-
- @property
- def channels(self):
- """
- These are labels created by the NIS Elements user. Typically they may a short description of the filter cube
- used (e.g. "bright field", "GFP", etc.)
-
- :rtype: list
-
- """
- return self._channels
-
- @property
- def fields_of_view(self):
- """
- The metadata contains information about fields of view, but it contains it even if some fields
- of view were cropped. We can't find anything that states which fields of view are actually
- in the image data, so we have to calculate it. There probably is something somewhere, since
- NIS Elements can figure it out, but we haven't found it yet.
-
- :rtype: list
-
- """
- return self._fields_of_view
-
- @property
- def frames(self):
- """
- The number of cycles.
-
- :rtype: list
-
- """
- return self._frames
-
- @property
- def z_levels(self):
- """
- The different levels in the Z-plane. Just a sequence from 0 to n.
-
- :rtype: list
-
- """
- return self._z_levels
-
- @property
- def total_images_per_channel(self):
- """
- The total number of images of a particular channel (wavelength, filter, etc) in the entire ND2.
-
- :rtype: int
-
- """
- return self._total_images_per_channel
-
- @property
- def pixel_microns(self):
- """
- The width of a pixel in microns.
-
- :rtype: float
-
- """
- return self._pixel_microns
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