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nd2reader
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  • 10348e6 Workaround issue #6, fix unit test timesteps by Ruben Verweij 2018-08-23 15:26:57 +0200
  • 121cf0b Fix to take into account real acquisition times when calculating framerate instead of the set interval (which is sometimes inaccurate) by Ruben Verweij 2018-08-22 13:58:51 +0200
  • 96922d8 3.0.9 by Ruben Verweij 2018-04-05 15:51:00 +0200
  • da10f6d Fix test and update gitignore by Ruben Verweij 2018-01-11 15:43:43 +0100
  • d16b4e7 Fix version number by Ruben Verweij 2018-01-11 15:35:35 +0100
  • a0b4119 New release by Ruben Verweij 2018-01-04 16:30:57 +0100
  • 4f8cf57 Version 3.0.7 by Ruben Verweij 2018-01-04 15:12:12 +0100
  • f5d9be6 Fix #4 by Ruben Verweij 2018-01-04 14:08:13 +0100
  • 42a0b48 Update contributing by Ruben Verweij 2017-11-01 15:28:48 +0100
  • 34b319c Add universal bdist wheel by Ruben Verweij 2017-10-30 15:37:23 +0100
  • 3367707 Version 3.0.6: Add FOV support by Ruben Verweij 2017-10-30 15:26:25 +0100
  • dc4e31c Add additional date formats for parsing raw metadata by Ruben Verweij 2017-09-19 11:26:15 +0200
  • 4a83dd3 Version 3.0.5 by Ruben Verweij 2017-08-11 14:01:36 +0200
  • 17ae112 Refactor CQ by Ruben Verweij 2017-07-19 17:09:16 +0200
  • 814c2c4 Test color channels, fix a bug in color channel encoding by Ruben Verweij 2017-07-19 15:02:14 +0200
  • abeb67b Test legacy Nd2, parser, reader fixes by Ruben Verweij 2017-07-19 12:06:14 +0200
  • 73ba16b Extend unit tests by Ruben Verweij 2017-07-19 11:29:55 +0200
  • f039b9e Extend unit tests, remove badge by Ruben Verweij 2017-07-19 10:54:54 +0200
  • 55b43d9 Remove unused lines from artificial by Ruben Verweij 2017-07-18 17:16:46 +0200
  • b143f85 Fix bytes compatibility for Python 2 by Ruben Verweij 2017-07-18 17:06:21 +0200
  • 1ddf100 Unit testing: test the correct parsing of image_attributes by Ruben Verweij 2017-07-18 17:00:15 +0200
  • d074c39 Add a class priority so this reader will be loaded before the Bioformats reader by Ruben Verweij 2017-07-10 17:10:39 +0200
  • 53737b6 Add try/except blocks to make code more robust + fix unit tests by Ruben Verweij 2017-07-07 12:30:23 +0200
  • 9fa2f42 Merge remote-tracking branch 'origin/master' by Ruben Verweij 2017-07-07 12:22:22 +0200
  • c4a783f Extend artificial to also write the label_map + data to file for more extensive unit testing by Ruben Verweij 2017-07-07 12:22:03 +0200
  • 4ff20b1 New documentation theme by Ruben Verweij 2017-07-06 21:59:03 +0200
  • 4d21e4b Fix imports of pims and release 3.0.4 by Ruben Verweij 2017-07-04 10:45:45 +0200
  • dc6c41e Fix small bug when uiCount cannot be found by Ruben Verweij 2017-06-22 09:58:02 +0200
  • 42ddb0e Version 3.0.3 by Ruben Verweij 2017-06-21 15:41:38 +0200
  • 738d0f6 Add a third method to determine the loop sampling interval by Ruben Verweij 2017-06-20 16:22:19 +0200
  • cbe5df4 Travis: use less python versions for testing by Ruben Verweij 2017-06-20 09:47:40 +0200
  • c1f216d Update travis script because of upstream bug by Ruben Verweij 2017-06-20 09:43:03 +0200
  • 40aa6c8 Cache timesteps and add frame rate property by Ruben Verweij 2017-06-20 09:36:52 +0200
  • a305f4b Always set 't' axis by Ruben Verweij 2017-06-19 09:21:55 +0200
  • d5752f1 Also get sampling interval when dAvgPeriodDiff is not set by Ruben Verweij 2017-06-16 15:11:23 +0200
  • 66fea7e New documentation by Ruben Verweij 2017-06-16 14:26:30 +0200
  • 689b79c Only setup certain axes if size > 1 by Ruben Verweij 2017-06-15 15:04:07 +0200
  • f81190e Update version 3.0.2 by Ruben Verweij 2017-05-08 14:02:54 +0200
  • 27955c7 Issue #2: fix calculation of image group number when there is no z-axis by Ruben Verweij 2017-04-19 15:05:11 +0200
  • a0bd4ae Merge remote-tracking branch 'origin/master' by Ruben Verweij 2017-04-19 12:09:50 +0200
  • aa84284 Issue #2: clean up axes handling, guess a better default axis by Ruben Verweij 2017-04-19 12:09:27 +0200
  • 28a68bb Update README.md by Ruben Verweij 2017-04-18 17:05:03 +0200
  • 96549f3 Merge remote-tracking branch 'origin/master' by Ruben Verweij 2017-04-18 16:50:55 +0200
  • 26138af Fix issue #2 by following PIMS conventions more closely by Ruben Verweij 2017-04-18 16:48:39 +0200
  • 4871f4e Installation via Conda Forge by Ruben Verweij 2017-04-18 09:17:15 +0200
  • 7674c9d Add conda installation instructions by Ruben Verweij 2017-04-18 09:16:21 +0200
  • 0de3286 Do not add 'z' to sizes of the reader if there is only one plane, as seems to be the PIMS convention by Ruben Verweij 2017-04-10 12:35:57 +0200
  • e76a377 version 3.0.1: Include LICENSE via MANIFEST.in for conda forge by Ruben Verweij 2017-04-06 15:50:54 +0200
  • 2298c82 Fix the number of frames by Ruben Verweij 2017-04-06 15:35:16 +0200
  • 41fa61d update docs for new version by Ruben Verweij 2017-04-04 09:29:04 +0200
  • a8cfdee Update readme for release on PyPi by Ruben Verweij 2017-04-04 09:24:30 +0200
  • 396f750 Update documentation, quick start tutorial by Ruben Verweij 2017-04-02 17:43:48 +0200
  • 22a3c1d Add test for raw metadata storage by Ruben Verweij 2017-03-30 15:43:23 +0200
  • 3785cf4 Add more unit test for common + fix possibly endless loop by Ruben Verweij 2017-03-30 15:28:49 +0200
  • 935ae29 Fix creating test file for unit tests by Ruben Verweij 2017-03-30 14:55:41 +0200
  • d69ae56 Bug fixes by testing different .nd2 files by Ruben Verweij 2017-03-30 14:36:00 +0200
  • 7bbdb0e Bump version number to reflect api changes by Ruben Verweij 2017-03-29 09:57:52 +0200
  • e5e0e88 Update README.md by Ruben Verweij 2017-03-17 10:41:35 +0100
  • 6f4536f Add badge by Ruben Verweij 2017-03-17 10:40:18 +0100
  • a21afd8 Add badge by Ruben Verweij 2017-03-17 10:32:25 +0100
  • 0335cff Add badge by Ruben Verweij 2017-03-17 10:21:21 +0100
  • c289a45 Extend unit tests by Ruben Verweij 2017-03-17 09:57:37 +0100
  • 90d0235 Extend unit tests by Ruben Verweij 2017-03-17 09:52:28 +0100
  • 235afcc Extend unit tests by Ruben Verweij 2017-03-16 17:31:38 +0100
  • 676fb77 Fix link by Ruben Verweij 2017-03-16 10:40:13 +0100
  • 760644d New documentation by Ruben Verweij 2017-03-16 10:38:37 +0100
  • cbb1809 Very basic Reader test by Ruben Verweij 2017-03-15 16:59:33 +0100
  • 627cbe7 Last test of LabelMap by Ruben Verweij 2017-03-15 16:48:01 +0100
  • edd39fd Code fixes by Ruben Verweij 2017-03-15 16:39:13 +0100
  • 010ee2a Test the LabelMap by Ruben Verweij 2017-03-15 16:26:37 +0100
  • 4817f8b Add test for Parser by Ruben Verweij 2017-03-15 14:20:53 +0100
  • 7c64267 Add ArtificialND2 class to help in testing nd2 file reading and parsing by Ruben Verweij 2017-03-15 14:02:53 +0100
  • b326bbf Remove functional test for now, cannot store large nd2 files on github by Ruben Verweij 2017-03-15 13:36:47 +0100
  • ebeef2d Remove test data (until I find a solution to store them on github) by Ruben Verweij 2017-03-15 13:26:27 +0100
  • 8b0563a data by Ruben Verweij 2017-03-15 12:50:36 +0100
  • fc5f591 Test files to git large file storage (git LFS) by Ruben Verweij 2017-03-15 12:37:14 +0100
  • 3620064 Update tests by Ruben Verweij 2017-03-15 12:16:39 +0100
  • c6e5a13 Provide backwards compatibility with old 2.1.3 version by Ruben Verweij 2017-03-15 10:49:45 +0100
  • 2eb6c8e update docs by Ruben Verweij 2017-03-15 10:22:11 +0100
  • d5e2726 Update tutorial by Ruben Verweij 2017-03-15 10:20:37 +0100
  • 8e2b082 Update README.md by Ruben Verweij 2017-03-15 09:50:02 +0100
  • b7ff34d Cleanup documentation by Ruben Verweij 2017-03-14 16:04:23 +0100
  • 719c44e Merge remote-tracking branch 'origin/master' by Ruben Verweij 2017-03-14 14:27:00 +0100
  • 480432d Improve documentation by Ruben Verweij 2017-03-14 14:23:22 +0100
  • 9d4d8e8 Update README.md by Ruben Verweij 2017-03-10 11:31:13 +0100
  • 0d3a5c0 Update README.md by Ruben Verweij 2017-03-10 11:30:06 +0100
  • 2f2f138 docstrings by Ruben Verweij 2017-03-08 14:19:53 +0100
  • 0d1f14c Merge branch 'master' of https://github.com/rbnvrw/nd2reader by Ruben Verweij 2017-03-08 10:28:43 +0100
  • 60378ad Cleanup docstrings to use google python docs by Ruben Verweij 2017-03-08 10:28:30 +0100
  • 92a3ab6 Update README.md by Ruben Verweij 2017-03-08 10:04:02 +0100
  • 9d7c431 generated docs in other branch by Ruben Verweij 2017-03-08 10:02:17 +0100
  • e7e7a21 API docs using Sphinx by Ruben Verweij 2017-03-06 21:41:36 +0100
  • 31dd191 Update README.md by Ruben Verweij 2017-03-06 21:08:10 +0100
  • fec7afa Set theme jekyll-theme-cayman by Ruben Verweij 2017-03-06 21:04:51 +0100
  • 09b6b80 Create index.md by Ruben Verweij 2017-03-06 21:03:54 +0100
  • 4841c09 Correctly parse experiment data for NDAqcuisition and add get_timesteps function to reader by Ruben Verweij 2017-03-06 13:38:49 +0100
  • 0ba1365 Add ability to bundle the color axis by Ruben Verweij 2017-03-03 14:36:33 +0100
  • a398edf Add ability to bundle the color axis by Ruben Verweij 2017-03-03 13:56:24 +0100
  • a70e3b6 Speedup numpy installation on travis by Ruben Verweij 2017-03-02 14:34:35 +0100
  • 2ad3db2 Fix old leftover in setup by Ruben Verweij 2017-03-02 14:02:53 +0100