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@ -14,9 +14,19 @@ log.setLevel(logging.DEBUG) |
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class Nd2(Nd2Parser): |
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def __init__(self, filename, image_sets=False): |
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def __init__(self, filename): |
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super(Nd2, self).__init__(filename) |
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self._use_image_sets = image_sets |
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self._filename = filename |
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def __repr__(self): |
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return "\n".join(["ND2: %s" % self._filename, |
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"Created: %s" % self.absolute_start.strftime("%Y-%m-%d %H:%M:%S"), |
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"Image size: %sx%s (HxW)" % (self.height, self.width), |
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"Image cycles: %s" % self.time_index_count, |
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"Channels: %s" % ", ".join(["'%s'" % channel for channel in self.channels]), |
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"Fields of View: %s" % self.field_of_view_count, |
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"Z-Levels: %s" % self.z_level_count |
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]) |
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def __iter__(self): |
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for i in range(self._image_count): |
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@ -125,11 +135,7 @@ class Nd2(Nd2Parser): |
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@property |
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def time_index_count(self): |
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""" |
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The number of image sets. If images were acquired using some kind of cycle, all images at each step in the |
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program will have the same timestamp (even though they may have varied by a few seconds in reality). For example, |
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if you have four fields of view that you're constantly monitoring, and you take a bright field and GFP image of |
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each, and you repeat that process 100 times, you'll have 800 individual images. But there will only be 400 |
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time indexes. |
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The number of cycles. |
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:rtype: int |
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