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@ -23,4 +23,35 @@ with ND2Reader('my_directory/example.nd2') as images: |
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plt.imshow(images[0]) |
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plt.imshow(images[0]) |
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``` |
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``` |
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After opening the file, all `pims` features are supported. Please refer to the [pims documentation](http://soft-matter.github.io/pims/). |
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After opening the file, all `pims` features are supported. Please refer to the [pims documentation](http://soft-matter.github.io/pims/). |
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### ND2 metadata |
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The ND2 file contains various metadata, such as acquisition information, |
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regions of interest and custom user comments. Most of this metadata is parsed |
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and available in dictionary form. For example: |
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```python |
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from nd2reader import ND2Reader |
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with ND2Reader('my_directory/example.nd2') as images: |
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# width and height of the image |
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print('%d x %d px' % (images.metadata['width'], images.metadata['height'])) |
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``` |
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All metadata properties are: |
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* `width`: the width of the image in pixels |
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* `height`: the height of the image in pixels |
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* `date`: the date the image was taken |
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* `fields_of_view`: the fields of view in the image |
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* `frames`: a list of all frame numbers |
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* `z_levels`: the z levels in the image |
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* `total_images_per_channel`: the number of images per color channel |
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* `channels`: the color channels |
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* `pixel_microns`: the amount of microns per pixel |
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* `rois`: the regions of interest (ROIs) defined by the user |
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* `experiment`: information about the nature and timings of the ND experiment |
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